Basic Information
Locus ID:
nbisL1-mrna-7232
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
DNA repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 17457180 | 17467030 | - | nbisL1-mrna-7232 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 43,907.70 Da | 40.90 | 77.36 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 3 | 76 | 1.50284E-30 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 170 | 219 | 1.16492E-30 | - |
| Pfam | PF00240 | Ubiquitin family | 5 | 78 | 1.3E-16 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 365 | 400 | 5.8E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 176 | 214 | 3.5E-13 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 173 | 222 | 3.06E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 344 | 406 | 2.38E-14 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 3 | 81 | 2.05E-21 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 1.3E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 356 | 404 | 2.3E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 169 | 219 | 1.8E-20 | - |
| SMART | SM00165 | uba_6 | 176 | 216 | 0.0011 | IPR015940 |
| SMART | SM00165 | uba_6 | 365 | 402 | 8.2E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 3 | 77 | 9.6E-23 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 3 | 286 | 1.5E-68 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 174 | 217 | 12.016758 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 363 | 403 | 14.836119 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 3 | 81 | 18.780491 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 359 | 375 | 7.2E-19 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 376 | 390 | 7.2E-19 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 391 | 406 | 7.2E-19 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 121 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_017608409.1 | - | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2KD69 | Ubiquitin receptor RAD23 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology