Basic Information
Locus ID:
nbisL1-mrna-7192
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 16881950 | 16884082 | + | nbisL1-mrna-7192 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 79,689.18 Da | 41.34 | 73.86 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 416 | 444 | 9.7E-4 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 580 | 700 | 1.0E-38 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 487 | 512 | 0.057 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 385 | 411 | 0.032 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 316 | 458 | 5.2E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 459 | 603 | 2.4E-11 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 416 | 449 | 9.0E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 413 | 447 | 10.413293 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 382 | 412 | 8.70333 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 107 | - | - |
| Coils | Coil | Coil | 200 | 220 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32450.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_012082955.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Jatropha curcas] | 0 |
| Q9SUU7 | Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H63 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LYX7 | Uncharacterized protein MANES_01G231600 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology