Basic Information
Locus ID:
nbisL1-mrna-7131
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000106F_pilon | 1234684 | 1235964 | + | nbisL1-mrna-7131 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 43,600.33 Da | 53.11 | 94.91 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 37 | 103 | 1.1E-5 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 198 | 328 | 1.7E-17 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 31 | 174 | 9.94E-17 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 181 | 329 | 1.09E-22 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 177 | 329 | 2.3E-15 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 24 | 170 | 1.0E-9 | IPR036378 |
| SMART | SM00554 | fasc_3 | 224 | 329 | 1.6E-15 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 25 | 172 | 11.943115 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 186 | 326 | 15.363186 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 382 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60900.1 | FASCICLIN-like arabinogalactan-protein 10. | 0 |
| RefSeq | XP_002511740.1 | fasciclin-like arabinogalactan protein 10 [Ricinus communis] | 0 |
| Q9LZX4 | Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2QP57 | Fasciclin-like arabinogalactan protein 8 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology