Basic Information
Locus ID:
nbisL1-mrna-7124
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 16005485 | 16008814 | - | nbisL1-mrna-7124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 112,221.89 Da | 45.42 | 103.04 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 297 | 585 | 5.67804E-91 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 611 | 811 | 9.20228E-91 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 297 | 564 | 2.7E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 629 | 763 | 1.3E-18 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 605 | 827 | 2.92E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 295 | 591 | 6.54E-36 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 855 | 1007 | 6.6E-7 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 609 | 841 | 8.0E-68 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 265 | 594 | 1.6E-49 | IPR036640 |
| SMART | SM00382 | AAA_5 | 638 | 811 | 9.9E-9 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 920 | 1007 | 9.737069 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 296 | 577 | 35.603718 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 611 | 834 | 22.088945 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 736 | 750 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 874 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 877 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021296203.1 | - | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JCN5 | ABC-type xenobiotic transporter OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology