Basic Information
Locus ID:
nbisL1-mrna-7085
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
spa1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001820F_pilon | 1774916 | 1781762 | - | nbisL1-mrna-7085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 100,753.43 Da | 62.53 | 79.64 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 674 | 710 | 2.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 759 | 794 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 585 | 895 | 6.48E-51 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 82 | 354 | 5.58E-21 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 563 | 898 | 2.7E-119 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 92 | 358 | 8.5E-24 | - |
| SMART | SM00320 | WD40_4 | 670 | 710 | 6.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 802 | 841 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 756 | 794 | 2.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 713 | 752 | 0.77 | IPR001680 |
| SMART | SM00220 | serkin_6 | 52 | 349 | 1.4E-4 | IPR000719 |
| SMART | SM00320 | WD40_4 | 631 | 667 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 858 | 896 | 64.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 582 | 617 | 0.98 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 349 | 11.59484 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 677 | 714 | 10.601049 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 763 | 796 | 9.968326 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 677 | 719 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 763 | 796 | 11.945434 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 781 | 795 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 654 | 668 | 4.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 697 | 711 | 4.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 781 | 795 | 4.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 53 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_021655518.1 | protein SPA1-RELATED 3-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MKH1 | Protein SPA1-RELATED 3 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology