Basic Information
Locus ID:
nbisL1-mrna-7060
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 21362343 | 21364289 | + | nbisL1-mrna-7060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 71,102.06 Da | 36.22 | 90.43 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 381 | 619 | 1.6E-39 | IPR000719 |
| Pfam | PF01476 | LysM domain | 121 | 167 | 0.0038 | IPR018392 |
| Pfam | PF01476 | LysM domain | 190 | 230 | 0.018 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 329 | 621 | 5.06E-63 | IPR011009 |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 243 | 344 | 4.18E-6 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 327 | 419 | 9.6E-14 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 110 | 182 | 2.0E-5 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 421 | 640 | 1.6E-54 | - |
| SMART | SM00220 | serkin_6 | 355 | 625 | 1.2E-23 | IPR000719 |
| SMART | SM00257 | LysM_2 | 120 | 167 | 0.34 | IPR018392 |
| SMART | SM00257 | LysM_2 | 187 | 230 | 0.24 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 186 | 229 | 9.251282 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 328 | 625 | 33.446003 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 119 | 166 | 8.760721 | IPR018392 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_039012488.1 | lysM domain receptor-like kinase 4 [Hibiscus syriacus] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2ZQ81 | Putative Serine-threonine protein kinase, plant-type OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110813pilonHSYRG00096 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology