Basic Information
Locus ID:
nbisL1-mrna-7059
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 15411406 | 15414029 | - | nbisL1-mrna-7059 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 62,800.98 Da | 49.35 | 98.50 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 3 | 40 | 1.5E-5 | IPR001810 |
| Pfam | PF07723 | Leucine Rich Repeat | 188 | 212 | 0.09 | IPR013101 |
| SUPERFAMILY | SSF52047 | RNI-like | 154 | 470 | 1.26E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 44 | 1.31E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 9.1E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 151 | 366 | 1.8E-13 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 54 | 10.133335 | IPR001810 |
| Coils | Coil | Coil | 62 | 85 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41630.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_021692286.1 | putative F-box/LRR-repeat protein At5g02700 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2C9VJ66 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology