Basic Information
Locus ID:
nbisL1-mrna-7058
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 15406750 | 15408225 | + | nbisL1-mrna-7058 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 49,628.31 Da | 46.70 | 93.26 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 43 | 3.8E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 57 | 1.96E-11 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 147 | 329 | 3.06E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 57 | 410 | 7.0E-19 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 43 | 3.1E-8 | - |
| SMART | SM00256 | fbox_2 | 10 | 53 | 0.002 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 57 | 10.10684 | IPR001810 |
| Coils | Coil | Coil | 417 | 432 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02920.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_042963396.1 | - | 0 |
| Q1PE04 | F-box/LRR-repeat protein 25 OS=Arabidopsis thaliana OX=3702 GN=FBL25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1N863 | F-box domain-containing protein (Fragment) OS=Carya illinoinensis OX=32201 GN=CIPAW_15G162600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology