Basic Information
Locus ID:
nbisL1-mrna-7003
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
C1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 14837619 | 14839890 | + | nbisL1-mrna-7003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 51,547.27 Da | 55.74 | 71.84 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 60 | 108 | 2.2E-11 | IPR004146 |
| Pfam | PF03107 | C1 domain | 290 | 339 | 3.0E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 238 | 279 | 1.5E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 155 | 240 | 1.83E-12 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 28 | 117 | 3.49E-19 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 263 | 340 | 3.66E-14 | - |
| SMART | SM00109 | c1_12 | 65 | 118 | 1.6 | IPR002219 |
| SMART | SM00109 | c1_12 | 238 | 290 | 0.13 | IPR002219 |
| SMART | SM00109 | c1_12 | 8 | 56 | 0.11 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 237 | 290 | 8.0099 | IPR002219 |
| Coils | Coil | Coil | 372 | 406 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28270.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_038696279.1 | - | 0 |
| TrEMBL | A0A7J7BV86 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G21810.1, AT2G21830.1, AT2G21840.1, AT2G21850.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000096m.g.v1.0, Thhalv10000100m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01290.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064140.2N, BniB05g064170.2N, BniB07g028200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0001 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12109, nbisL1-mrna-5028, nbisL1-mrna-5029 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.926 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-3275, nbisL1-mrna-3288, nbisL1-mrna-3294 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13823, nbisL1-mrna-5376 |
| Salicaceae | Populus euphratica | 5 | populus_peu08735, populus_peu19514, populus_peu19515 ... |