halophFGD

Basic Information

Locus ID: nbisL1-mrna-7001

Species & Taxonomic ID: Rhizophora apiculata & 106626

Genome Assembly: GCA_037832385.1

Description: Cyclin-dependent kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr14	3567478	3571473	+	nbisL1-mrna-7001

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.60	92,690.59 Da	51.81	70.21	-0.75

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd07843	STKc_CDC2L1	470	767	0.0	-
Pfam	PF00069	Protein kinase domain	476	767	4.1E-74	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	468	773	2.97E-100	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	464	558	2.0E-32	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	559	797	4.8E-73	-
SMART	SM00220	serkin_6	476	767	7.6E-102	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	476	767	47.636539	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	596	608	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	109	417	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	236	280	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	442	460	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	796	822	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	348	406	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	309	325	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	120	141	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	326	340	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	164	180	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	189	215	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	441	460	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	796	811	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K08818 (cell division cycle 2-like [EC:2.7.11.22])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G67580.1	Protein kinase superfamily protein.
RefSeq	XP_021635301.1	cyclin-dependent kinase G-2 [Hevea brasiliensis]
Swiss-Prot	A2XUW1	Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. indica OX=39946 GN=CDKG-2 PE=3 SV=1
TrEMBL	A0A2P2M8U2	cyclin-dependent kinase OS=Rhizophora mucronata OX=61149 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg34538, jg6974, jg9566
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14028, gene_3533
Amaranthaceae	Atriplex hortensis	4	Ah001971, Ah005524, Ah013849, Ah013898
Amaranthaceae	Beta vulgaris	3	BVRB_4g078040, BVRB_5g110640, BVRB_6g151410
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg32561, Sbi_jg32562, Sbi_jg32568, Sbi_jg32570 ... Sbi_jg42716, Sbi_jg45339
Amaranthaceae	Salicornia europaea	2	Seu_jg11202, Seu_jg7525
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002599, GOSA_00017220
Amaranthaceae	Suaeda glauca	4	Sgl35072, Sgl40457, Sgl53233, Sgl58495
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000000231, gene:ENSEOMG00000005153 ... gene:ENSEOMG00000010450, gene:ENSEOMG00000015814, gene:ENSEOMG00000023262, gene:ENSEOMG00000024277, gene:ENSEOMG00000026485, gene:ENSEOMG00000031304, gene:ENSEOMG00000043873
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0006190, CQ.Regalona.r1.4BG0006340 ... CQ.Regalona.r1.5AG0016210, CQ.Regalona.r1.5BG0017470, CQ.Regalona.r1.6AG0003440, CQ.Regalona.r1.6BG0003340
Anacardiaceae	Pistacia vera	4	pistato.v30140920, pistato.v30141430, pistato.v30223570 ... pistato.v30228210
Apiaceae	Apium graveolens	9	Ag10G01211, Ag10G01214, Ag10G01215, Ag4G01407, Ag5G01941 ... Ag5G01942, Ag5G02268, Ag8G02267, Ag8G02268
Arecaceae	Cocos nucifera	3	COCNU_02G013000, scaffold009612G000010 ... scaffold009941G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103714762, gene-LOC103719868
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.2001.V1.1, AsparagusV1_09.618.V1.1
Asteraceae	Flaveria trinervia	4	Ftri18G11566, Ftri1G29156, Ftri8G32205, Ftri9G14122
Brassicaceae	Arabidopsis thaliana	2	AT1G67580.1, AT5G63370.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10003850m.g.v1.0, Thhalv10010233m.g.v1.0 ... Thhalv10018174m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g26460.v2.2, Sp5g13470.v2.2, Sp5g22600.v2.2
Brassicaceae	Brassica nigra	3	BniB03g044790.2N, BniB04g001940.2N, BniB06g023760.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G1697, Ceq07G1265
Casuarinaceae	Casuarina glauca	2	Cgl04G1880, Cgl07G1340
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g08230, gene.Cymno08g04980
Dunaliellaceae	Dunaliella salina	3	Dusal.0007s00016.v1.0, Dusal.0069s00015.v1.0 ... Dusal.1990s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g15480, gene.Thate06g10700
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11507, nbisL1-mrna-5586
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.724, evm.TU.LG10.1042
Plantaginaceae	Plantago ovata	2	Pov_00022226, Pov_00033718
Plumbaginaceae	Limonium bicolor	2	Lb0G38404, Lb1G07775
Poaceae	Echinochloa crus-galli	6	AH07.2501, AH09.1383, BH07.2308, BH09.1566, CH07.2384 ... CH09.1685
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0136530, gene-QOZ80_2BG0192090 ... gene-QOZ80_4AG0312760, gene-QOZ80_4BG0343930
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0177110.1, HORVU.MOREX.r3.6HG0592200.1
Poaceae	Lolium multiflorum	2	gene-QYE76_023499, gene-QYE76_044781
Poaceae	Oryza coarctata	4	Oco03G014550, Oco04G015010, Oco07G009170, Oco08G009030
Poaceae	Oryza sativa	2	LOC_Os02g39010.1, LOC_Os04g41100.4
Poaceae	Paspalum vaginatum	2	gene-BS78_04G161900, gene-BS78_06G142200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0204505, Pt_Chr0302306, Pt_Chr0307200
Poaceae	Sporobolus alterniflorus	8	Chr06G007850, Chr09G012370, Chr13G008300, Chr15G009510 ... Chr23G010070, Chr25G009590, Chr26G009700, Chr30G009420
Poaceae	Thinopyrum elongatum	2	Tel2E01G602800, Tel6E01G416500
Poaceae	Triticum dicoccoides	3	gene_TRIDC2AG050100, gene_TRIDC6AG033190 ... gene_TRIDC6BG039510
Poaceae	Triticum aestivum	6	TraesCS2A02G346500.1, TraesCS2B02G364800.5 ... TraesCS2D02G345200.4, TraesCS6A02G214100.1, TraesCS6B02G244100.1, TraesCS6D02G196700.1
Poaceae	Zea mays	3	Zm00001eb078950_P001, Zm00001eb246420_P001 ... Zm00001eb425450_P001
Poaceae	Zoysia japonica	2	nbis-gene-18605, nbis-gene-7336
Poaceae	Zoysia macrostachya	2	Zma_g16630, Zma_g21507
Portulacaceae	Portulaca oleracea	3	evm.TU.LG01.2822, evm.TU.LG03.1350, evm.TU.LG12.407
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g14870
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.60456.9, evm.TU.Scaffold_11_RagTag.1539 ... evm.TU.Scaffold_15_RagTag.847, evm.TU.Scaffold_17_RagTag.150
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-12303, nbisL1-mrna-23207, nbisL1-mrna-27035 ... nbisL1-mrna-27223
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11349, nbisL1-mrna-20628, nbisL1-mrna-9309
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12686, nbisL1-mrna-14663, nbisL1-mrna-15556 ... nbisL1-mrna-15557
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000001l.467, evm.TU.utg000010l.187 ... evm.TU.utg000013l.93
Rhizophoraceae	Kandelia obovata	3	Maker00002422, Maker00006734, Maker00008894
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-11190, nbisL1-mrna-676, nbisL1-mrna-7001
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-15962, nbisL1-mrna-17678, nbisL1-mrna-8763
Salicaceae	Populus euphratica	6	populus_peu07639, populus_peu21674, populus_peu21675 ... populus_peu28811, populus_peu28812, populus_peu30224
Solanaceae	Lycium barbarum	2	gene-LOC132616392, gene-LOC132641251
Solanaceae	Solanum chilense	1	SOLCI001817000
Solanaceae	Solanum pennellii	1	gene-LOC107020261
Tamaricaceae	Reaumuria soongarica	4	STRG.19733_chr07_+, STRG.5114_chr03_-, gene_11160, gene_6666
Tamaricaceae	Tamarix chinensis	3	TC04G0731, TC08G2600, TC09G0870
Zosteraceae	Zostera marina	1	Zosma05g07210.v3.1