Basic Information
Locus ID:
nbisL1-mrna-6978
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 14613063 | 14621578 | - | nbisL1-mrna-6978 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 84,251.11 Da | 30.64 | 79.40 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 73 | 109 | 6.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 115 | 153 | 0.22 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 163 | 214 | 0.0051 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 389 | 442 | 3.2E-7 | IPR006692 |
| Pfam | PF04053 | Coatomer WD associated region | 466 | 570 | 1.2E-24 | IPR006692 |
| Pfam | PF04053 | Coatomer WD associated region | 249 | 344 | 4.3E-24 | IPR006692 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 39 | 227 | 2.52E-42 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 204 | 430 | 2.01E-5 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 507 | 581 | 1.3E-14 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 29 | 251 | 3.2E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 70 | 109 | 7.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 113 | 153 | 0.0031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 29 | 67 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 197 | 0.092 | IPR001680 |
| PIRSF | PIRSF005567 | Beta'-COP | 367 | 444 | 2.3E-10 | IPR016453 |
| PIRSF | PIRSF005567 | Beta'-COP | 575 | 722 | 5.8E-11 | IPR016453 |
| PIRSF | PIRSF005567 | Beta'-COP | 433 | 473 | 0.026 | IPR016453 |
| PIRSF | PIRSF005567 | Beta'-COP | 240 | 352 | 2.6E-33 | IPR016453 |
| PIRSF | PIRSF005567 | Beta'-COP | 35 | 246 | 6.6E-92 | IPR016453 |
| PIRSF | PIRSF005567 | Beta'-COP | 467 | 581 | 1.6E-31 | IPR016453 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 120 | 154 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 77 | 109 | 10.126507 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 120 | 154 | 8.834696 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 77 | 109 | 12.145943 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 738 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 715 | 738 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.2 | structural molecules. | 0 |
| RefSeq | XP_022714929.1 | coatomer subunit beta'-2 isoform X2 [Durio zibethinus] | 0 |
| Q9CAA0 | Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2 | 0 | |
| TrEMBL | A0A540N069 | Coatomer subunit beta' OS=Malus baccata OX=106549 GN=C1H46_009962 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology