Basic Information
Locus ID:
nbisL1-mrna-6969
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 14430870 | 14432152 | + | nbisL1-mrna-6969 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 39,163.98 Da | 28.51 | 75.96 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 212 | 248 | 5.1E-5 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 118 | 152 | 3.6E-5 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 166 | 201 | 2.7E-8 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 79 | 337 | 4.18E-42 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 46 | 7.98E-6 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 45 | 348 | 3.2E-41 | IPR015915 |
| SMART | SM00612 | kelc_smart | 168 | 215 | 2.7E-8 | IPR006652 |
| SMART | SM00256 | fbox_2 | 7 | 47 | 0.0012 | IPR001810 |
| SMART | SM00612 | kelc_smart | 216 | 267 | 2.9 | IPR006652 |
| SMART | SM00612 | kelc_smart | 117 | 166 | 0.17 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80440.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_034916999.1 | - | 0 |
| Q9M8L2 | F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U5QL73 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology