Basic Information
Locus ID:
nbisL1-mrna-6968
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001820F_pilon | 995604 | 1000521 | + | nbisL1-mrna-6968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 55,297.18 Da | 25.41 | 109.65 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 266 | 353 | 1.88447E-27 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 248 | 3.5E-18 | IPR039010 |
| Pfam | PF00168 | C2 domain | 265 | 353 | 9.9E-21 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 262 | 392 | 9.82E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 259 | 417 | 2.2E-30 | IPR035892 |
| SMART | SM00239 | C2_3c | 265 | 362 | 3.4E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 365 | 20.534513 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 249 | 24.000616 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 281 | 293 | 1.8E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 328 | 336 | 1.8E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 306 | 319 | 1.8E-5 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 504 | - | - |
| Coils | Coil | Coil | 391 | 418 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_021613362.1 | calcium-dependent lipid-binding protein [Manihot esculenta] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MUP3 | Uncharacterized protein MANES_05G043200 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology