Basic Information
Locus ID:
nbisL1-mrna-6917
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
DNA repair protein recA homolog 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001820F_pilon | 664393 | 671064 | + | nbisL1-mrna-6917 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 51,844.24 Da | 34.04 | 82.22 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 122 | 445 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 125 | 387 | 1.6E-116 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 387 | 444 | 4.97E-18 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 123 | 386 | 6.35E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 152 | 453 | 1.4E-101 | IPR027417 |
| SMART | SM00382 | AAA_5 | 174 | 345 | 2.2E-8 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 122 | 442 | 4.6E-142 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 153 | 311 | 28.19471 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 316 | 391 | 28.13595 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 330 | 338 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 210 | 239 | 1.6E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 244 | 273 | 1.6E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 416 | 433 | 1.6E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 327 | 355 | 1.6E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 282 | 311 | 1.6E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 362 | 391 | 1.6E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 123 | 448 | 44.943672 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 473 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_021595011.1 | DNA repair protein recA homolog 1, chloroplastic [Manihot esculenta] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2K448 | Uncharacterized protein MANES_15G102600 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology