Basic Information
Locus ID:
nbisL1-mrna-690
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
heat shock factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 6066034 | 6069774 | - | nbisL1-mrna-690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 31,957.97 Da | 44.78 | 58.90 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00447 | HSF-type DNA-binding | 10 | 99 | 4.1E-32 | IPR000232 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 7 | 99 | 5.89E-33 | IPR036390 |
| Gene3D | G3DSA:6.10.250.2730 | - | 152 | 195 | 1.9E-5 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 2 | 101 | 2.5E-37 | IPR036388 |
| SMART | SM00415 | hsfneu3 | 6 | 99 | 2.4E-58 | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 49 | 73 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 10 | 33 | 3.8E-21 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 48 | 60 | 3.8E-21 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 61 | 73 | 3.8E-21 | IPR000232 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 236 | - | - |
| Coils | Coil | Coil | 154 | 188 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36990.1 | heat shock factor 4. encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins. | 0 |
| RefSeq | XP_012079229.1 | heat shock factor protein HSF24 [Jatropha curcas] | 0 |
| P22335 | Heat shock factor protein HSF24 OS=Solanum peruvianum OX=4082 GN=HSF24 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067KI29 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology