Basic Information
Locus ID:
nbisL1-mrna-6899
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000063F_pilon | 4611436 | 4613295 | + | nbisL1-mrna-6899 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 31,665.46 Da | 46.12 | 70.63 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 31 | 116 | 5.19213E-49 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 35 | 116 | 5.3E-19 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 25 | 124 | 1.01E-31 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 22 | 129 | 2.0E-27 | IPR036431 |
| SMART | SM00501 | bright_3 | 30 | 121 | 7.0E-35 | IPR001606 |
| SMART | SM01014 | ARID_2 | 26 | 116 | 4.1E-34 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 29 | 120 | 26.215782 | IPR001606 |
| Coils | Coil | Coil | 257 | 277 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021601209.1 | high mobility group B protein 9 [Manihot esculenta] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K8Z6 | Uncharacterized protein MANES_18G008500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology