Basic Information
Locus ID:
nbisL1-mrna-6871
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
BEACH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 2878278 | 2899707 | - | nbisL1-mrna-6871 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 326,609.13 Da | 46.74 | 89.05 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01201 | PH_BEACH | 2115 | 2223 | 4.18071E-30 | IPR023362 |
| CDD | cd06071 | Beach | 2247 | 2524 | 2.63874E-152 | IPR000409 |
| Pfam | PF02138 | Beige/BEACH domain | 2248 | 2523 | 6.1E-117 | IPR000409 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2681 | 2711 | 3.2E-7 | IPR001680 |
| Pfam | PF15787 | Domain of unknown function (DUF4704) | 685 | 965 | 1.8E-49 | IPR031570 |
| Pfam | PF14844 | PH domain associated with Beige/BEACH | 2124 | 2220 | 2.7E-26 | IPR023362 |
| SUPERFAMILY | SSF50729 | PH domain-like | 2115 | 2223 | 7.38E-23 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2647 | 2956 | 1.28E-28 | IPR036322 |
| SUPERFAMILY | SSF81837 | BEACH domain | 2233 | 2524 | 4.97E-125 | IPR036372 |
| Gene3D | G3DSA:2.130.10.10 | - | 2734 | 2968 | 1.1E-10 | IPR015943 |
| Gene3D | G3DSA:2.30.29.30 | - | 2115 | 2219 | 1.5E-31 | IPR011993 |
| Gene3D | G3DSA:2.130.10.10 | - | 2625 | 2729 | 2.8E-12 | IPR015943 |
| Gene3D | G3DSA:1.10.1540.10 | BEACH domain | 2236 | 2524 | 7.8E-138 | IPR036372 |
| SMART | SM00320 | WD40_4 | 2917 | 2957 | 2.8 | IPR001680 |
| SMART | SM01026 | Beach_2 | 2247 | 2524 | 1.4E-198 | IPR000409 |
| SMART | SM00320 | WD40_4 | 2672 | 2711 | 4.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2752 | 2791 | 0.013 | IPR001680 |
| ProSiteProfiles | PS50197 | BEACH domain profile. | 2235 | 2524 | 118.865662 | IPR000409 |
| ProSiteProfiles | PS51783 | BEACH-type PH domain profile. | 2112 | 2220 | 33.227676 | IPR023362 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2679 | 2720 | 14.451798 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 2679 | 2713 | 11.629227 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1022 | 1042 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1414 | 1445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1414 | 1437 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45540.1 | WD-40 repeat family protein / beige-related. | 0 |
| RefSeq | XP_021686221.1 | BEACH domain-containing protein C2-like isoform X1 [Hevea brasiliensis] | 0 |
| F4IG73 | BEACH domain-containing protein C2 OS=Arabidopsis thaliana OX=3702 GN=BCHC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M591 | Uncharacterized protein LOC105643091 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1846, jg1847, jg1848, jg29278 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1369 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023141 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4367, Sbi_jg49460 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5780 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000325 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl11229, Sgl11230, Sgl16624, Sgl16625 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016088, gene:ENSEOMG00000032260 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0005980, CQ.Regalona.r1.2BG0023740 |
| Apiaceae | Apium graveolens | 2 | Ag5G01122, Ag6G01646 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G011840, COCNU_10G008780, COCNU_10G008810 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718064 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_04.941.V1.1, AsparagusV1_07.1419.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G02178, Ftri7G23688 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G45540.2, AT3G60920.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001277m.g.v1.0, Thhalv10005733m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g27560.v2.2, Sp5g02330.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g004010.2N, BniB06g062260.2N, BniB08g075190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0463 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0494 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00810 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0165s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g22740 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.218 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040463 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10536, Lb2G10543 |
| Poaceae | Echinochloa crus-galli | 5 | AH09.1873, BH07.2728, BH09.2042, CH07.2801, CH09.2184 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0140040, gene-QOZ80_4AG0307900 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0188960.1, HORVU.MOREX.r3.6HG0601780.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024206, gene-QYE76_045451 |
| Poaceae | Oryza coarctata | 2 | Oco04G018210, Oco08G012370 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g44380.2, LOC_Os04g46892.1, LOC_Os04g46894.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G221800, gene-BS78_06G185000 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0205946, Pt_Chr0206468, Pt_Chr0301732, Pt_Chr0502277 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G024100, Chr0G020220, Chr15G007290, Chr23G006890 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G701000, Tel6E01G464300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2BG062500, gene_TRIDC6AG038120 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G410800.1, TraesCS2B02G429600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb074430_P001, Zm00001eb249850_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37298 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14071, Zma_g20204 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.2375, evm.TU.LG19.824, evm.TU.LG24.823 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g05210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.378 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21723 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15720 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7126, nbisL1-mrna-7127 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.313 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009920 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6871 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12712 |
| Salicaceae | Populus euphratica | 4 | populus_peu27817, populus_peu31759, populus_peu31760 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645621 |
| Solanaceae | Solanum chilense | 1 | SOLCI004363100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032398 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_822 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2698 |
| Zosteraceae | Zostera marina | 1 | Zosma03g27140.v3.1 |