Basic Information
Locus ID:
nbisL1-mrna-6869
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001820F_pilon | 272283 | 278307 | - | nbisL1-mrna-6869 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 134,458.23 Da | 44.42 | 73.83 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 946 | 1200 | 1.47582E-103 | - |
| CDD | cd06410 | PB1_UP2 | 110 | 206 | 4.38709E-41 | - |
| Pfam | PF00564 | PB1 domain | 124 | 206 | 4.4E-16 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 942 | 1200 | 2.4E-59 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 929 | 1200 | 3.6E-74 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 122 | 212 | 8.34E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 922 | 1219 | 3.1E-76 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 125 | 208 | 6.0E-11 | - |
| SMART | SM00220 | serkin_6 | 940 | 1204 | 3.6E-56 | IPR000719 |
| SMART | SM00666 | PB1_new | 121 | 208 | 4.5E-25 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 940 | 1204 | 39.636696 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1062 | 1074 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 946 | 968 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1171 | 1193 | 2.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1019 | 1032 | 2.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1127 | 1149 | 2.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1056 | 1074 | 2.4E-12 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 714 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79570.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_002307185.4 | uncharacterized protein LOC7480431 [Populus trichocarpa] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2AE74 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology