Basic Information
Locus ID:
nbisL1-mrna-6822
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002085F_pilon | 5212301 | 5216078 | + | nbisL1-mrna-6822 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 58,793.30 Da | 49.48 | 87.38 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06337 | DUSP domain | 13 | 102 | 2.5E-19 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 280 | 434 | 7.3E-44 | IPR001394 |
| SUPERFAMILY | SSF143791 | DUSP-like | 13 | 102 | 7.98E-20 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 277 | 466 | 3.53E-54 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 265 | 473 | 2.8E-66 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 117 | 204 | 2.2E-11 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 12 | 116 | 5.2E-26 | - |
| SMART | SM00695 | dusp | 5 | 105 | 2.0E-16 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 1 | 102 | 14.914266 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 279 | 531 | 27.714792 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 280 | 295 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10590.1 | ubiquitin-specific protease 10. encodes a member of the ubiquitin-specific protease family, UBP10 | 0 |
| RefSeq | XP_012086628.1 | - | 0 |
| Q93Y01 | Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=UBP9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KY45 | Ubiquitin carboxyl-terminal hydrolase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology