Basic Information
Locus ID:
nbisL1-mrna-6813
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002085F_pilon | 5162174 | 5163611 | + | nbisL1-mrna-6813 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 51,866.65 Da | 44.87 | 79.98 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04873 | ACT_UUR-ACR-like | 417 | 468 | 0.00507828 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 21 | 207 | 2.6E-39 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 308 | 353 | 1.3E-10 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 307 | 373 | 2.09E-16 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 303 | 371 | 2.1E-15 | IPR036638 |
| SMART | SM00353 | finulus | 310 | 359 | 1.5E-15 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 304 | 353 | 16.011814 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 316 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_002299425.1 | - | 0 |
| Q39204 | Transcription factor MYC2 OS=Arabidopsis thaliana OX=3702 GN=MYC2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8AV56 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology