Basic Information
Locus ID:
nbisL1-mrna-6805
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
UAS
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002085F_pilon | 5103673 | 5105583 | + | nbisL1-mrna-6805 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 29,085.74 Da | 48.86 | 80.71 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 164 | 237 | 2.70361E-15 | - |
| Pfam | PF00789 | UBX domain | 158 | 237 | 2.2E-13 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 119 | 237 | 4.91E-21 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 162 | 242 | 9.8E-19 | - |
| ProSiteProfiles | PS50033 | UBX domain profile. | 158 | 236 | 12.092116 | IPR001012 |
| Coils | Coil | Coil | 106 | 152 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10790.1 | UBX domain-containing protein. | 0 |
| RefSeq | XP_040987001.1 | - | 0 |
| Q9M0N1 | Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=PUX10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2N9G0K7 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg4996, jg7481 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1737 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003965 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103680 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24110, Sbi_jg7949 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12088 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010704 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl52318, Sgl57582, Sgl57595 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000005856, gene:ENSEOMG00000026088 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0005130, CQ.Regalona.r1.5BG0005510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30133600 |
| Apiaceae | Apium graveolens | 1 | Ag11G04729 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G006670, COCNU_10G005010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707710, gene-LOC103719463 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1147.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G29526, Ftri14G23588, Ftri16G22527, Ftri7G15065 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G10790.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10025495m.g.v1.0, Thhalv10028607m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06710.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g050390.2N, BniB05g058270.2N, BniB08g036060.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0628 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0721 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g08970 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0069s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01850 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1591 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005208 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G19605, Lb4G22381 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3158, BH01.3519, CH01.3725 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0114070, gene-QOZ80_2BG0167830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0050850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012164 |
| Poaceae | Oryza coarctata | 2 | Oco19G008250, Oco20G008090 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g37630.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G310500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502994 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G029290, Chr09G002940, Chr13G021870, Chr15G020520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G323700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG027730, gene_TRIDC1BG033170 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G182700.1, TraesCS1B02G198000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb021210_P001, Zm00001eb044430_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34422, nbis-gene-36115 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12778, Zma_g15534 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2621, evm.TU.LG23.848 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc06g00550, gene.Posoc06g11300, gene.Posoc08g01600 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.50 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-18358, nbisL1-mrna-22217, nbisL1-mrna-22289 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7371 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8667 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000022l.259, evm.TU.utg000007l.367 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018685 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15936, nbisL1-mrna-3613 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11040, nbisL1-mrna-6805 |
| Salicaceae | Populus euphratica | 2 | populus_peu03745, populus_peu34587 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609954, gene-LOC132634727 |
| Solanaceae | Solanum chilense | 2 | SOLCI002710300, SOLCI004212700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107029087, gene-LOC107029089 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.10793_chr07_-, STRG.13818_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3142 |
| Zosteraceae | Zostera marina | 1 | Zosma01g02690.v3.1 |