Basic Information
Locus ID:
nbisL1-mrna-6802
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 17122712 | 17133974 | - | nbisL1-mrna-6802 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 68,889.06 Da | 46.70 | 96.50 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 301 | 588 | 6.23705E-48 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 331 | 0.017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 341 | 376 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 506 | 545 | 0.17 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 553 | 588 | 1.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 380 | 417 | 9.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 293 | 588 | 1.47E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 553 | 609 | 4.3E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 292 | 552 | 1.6E-54 | IPR015943 |
| SMART | SM00320 | WD40_4 | 504 | 546 | 0.94 | IPR001680 |
| SMART | SM00320 | WD40_4 | 462 | 500 | 38.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 549 | 589 | 3.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 420 | 460 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 332 | 9.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 379 | 418 | 0.0031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 376 | 2.1E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 556 | 592 | 11.65559 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 8.320162 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 300 | 334 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 556 | 598 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 398 | 420 | 9.171722 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 300 | 334 | 8.887423 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 344 | 381 | 11.128319 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 344 | 385 | 14.552052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 319 | 333 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 405 | 419 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_038994553.1 | WD repeat-containing protein 26 homolog [Hibiscus syriacus] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3B1B1 | Transducin family protein / WD-40 repeat family protein isoform 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110328pilonHSYRG01030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology