Basic Information
Locus ID:
nbisL1-mrna-678
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001172F_pilon | 4187261 | 4189311 | - | nbisL1-mrna-678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 51,043.62 Da | 53.61 | 75.20 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 163 | 432 | 9.12475E-42 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 180 | 237 | 2.7E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 296 | 1.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 397 | 432 | 6.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 347 | 0.0063 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 148 | 432 | 5.04E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 86 | 435 | 6.4E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 257 | 296 | 1.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 3.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 127 | 168 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 347 | 1.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 390 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 393 | 432 | 9.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.93 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 212 | 8.992876 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 400 | 433 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 400 | 433 | 10.416506 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 296 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 296 | 13.917108 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 419 | 433 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_021621334.1 | cell division cycle 20.1, cofactor of APC complex [Manihot esculenta] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9VIE8 | ANAPC4_WD40 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_08G164600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology