Basic Information
Locus ID:
nbisL1-mrna-6756
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000063F_pilon | 3648823 | 3656579 | - | nbisL1-mrna-6756 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 112,122.71 Da | 53.60 | 71.00 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 77 | 114 | 3.8E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 493 | 795 | 1.0E-43 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 118 | 2.79E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 490 | 800 | 1.73E-83 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 67 | 117 | 5.2E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 486 | 806 | 1.9E-90 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 493 | 798 | 49.902466 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 77 | 114 | 11.559457 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 494 | 509 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 77 | 114 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 898 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 961 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 940 | 977 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 810 | 837 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 837 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 963 | 977 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_011016914.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Populus euphratica] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L7C0 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology