Basic Information
Locus ID:
nbisL1-mrna-6749
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 12198099 | 12203178 | - | nbisL1-mrna-6749 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 49,146.82 Da | 50.49 | 73.01 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 85 | 155 | 7.37124E-37 | - |
| CDD | cd12619 | RRM2_PUB1 | 169 | 243 | 2.91569E-52 | - |
| CDD | cd12354 | RRM3_TIA1_like | 289 | 364 | 1.71321E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 85 | 151 | 1.9E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 170 | 240 | 1.2E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 291 | 350 | 3.9E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 276 | 368 | 1.63E-19 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 68 | 161 | 6.58E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 162 | 251 | 5.91E-27 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 266 | 369 | 4.4E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 165 | 262 | 5.6E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 164 | 8.5E-25 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 290 | 360 | 1.3E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 169 | 242 | 6.5E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 84 | 153 | 2.8E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 168 | 246 | 17.011795 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 289 | 364 | 14.641094 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 83 | 157 | 15.527974 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 279 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_048329396.1 | oligouridylate-binding protein 1B isoform X1 [Ziziphus jujuba var. spinosa] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MF46 | Uncharacterized protein MANES_11G016600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology