Basic Information
Locus ID:
nbisL1-mrna-6744
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1289672 | 1301093 | + | nbisL1-mrna-6744 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 108,493.46 Da | 58.28 | 83.25 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 662 | 965 | 4.54216E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 659 | 687 | 0.19 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 742 | 780 | 6.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 829 | 864 | 0.013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 656 | 967 | 6.68E-53 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 147 | 451 | 2.96E-20 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 633 | 969 | 2.3E-118 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 188 | 458 | 1.9E-23 | - |
| SMART | SM00320 | WD40_4 | 698 | 737 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 923 | 967 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 873 | 912 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 652 | 687 | 0.45 | IPR001680 |
| SMART | SM00320 | WD40_4 | 740 | 780 | 6.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 783 | 822 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 826 | 864 | 1.2E-4 | IPR001680 |
| SMART | SM00220 | serkin_6 | 69 | 446 | 1.6E-6 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 747 | 789 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 833 | 866 | 9.889235 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 747 | 784 | 10.469233 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 69 | 446 | 13.050642 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 833 | 866 | 11.845179 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 851 | 865 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 767 | 781 | 5.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 724 | 738 | 5.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 851 | 865 | 5.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 344 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_021655518.1 | protein SPA1-RELATED 3-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MKL9 | Protein SPA1-RELATED 3 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology