Basic Information
Locus ID:
nbisL1-mrna-674
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 7082551 | 7086702 | - | nbisL1-mrna-674 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 45,573.31 Da | 39.02 | 77.48 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 59 | 336 | 8.63E-28 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 105 | 352 | 3.4E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 241 | 280 | 340.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 237 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 323 | 0.022 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 291 | 332 | 9.672996 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 310 | 324 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 396 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29320.2 | - | 0 |
| RefSeq | XP_021638565.1 | WD repeat-containing protein 74-like [Hevea brasiliensis] | 0 |
| Q6CEC9 | Ribosome biogenesis protein NSA1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=NSA1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2KWV8 | Uncharacterized protein MANES_14G053800 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18466 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14024 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah001954, Ah036320, Ah036321 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g110570 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31670, Sbi_jg57642 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25322 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008866 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62821, Sgl67437 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006694, gene:ENSEOMG00000022797 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.3AG0018630, CQ.Regalona.r1.5BG0017590 ... |
| Apiaceae | Apium graveolens | 1 | Ag10G00782 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000870 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719683 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1000.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G16546 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G29320.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007651m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g25270.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g016650.2N, BniB04g043880.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1694 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1876 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g02140 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0290s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g02600 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1045 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014582 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07785 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3101, BH03.3286, CH03.3472 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568510, gene-QOZ80_7BG0599840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0142760.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_041098, gene-QYE76_041193 |
| Poaceae | Oryza coarctata | 2 | Oco13G008160, Oco14G008630 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g32350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G288100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304150 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr24G008150, Chr27G011370, Chr28G007470 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G420800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG030330, gene_TRIDC2BG034020 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G233000.1, TraesCS2B02G250300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb105680_P001, Zm00001eb322320_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38360 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5204 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.426, evm.TU.LG21.125 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g04700 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60456.7, evm.TU.Scaffold_11_RagTag.1541 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12305 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15169 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12688 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.189 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008680 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-674 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8765 |
| Salicaceae | Populus euphratica | 2 | populus_peu28816, populus_peu30230 |
| Solanaceae | Lycium barbarum | 8 | gene-LOC132598932, gene-LOC132607899, gene-LOC132615385 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026706 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11159 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2605 |
| Zosteraceae | Zostera marina | 2 | Zosma04g25640.v3.1, Zosma05g05400.v3.1 |