Basic Information
Locus ID:
nbisL1-mrna-6739
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002085F_pilon | 4778393 | 4785308 | - | nbisL1-mrna-6739 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 119,221.86 Da | 47.08 | 72.26 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 927 | 959 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 837 | 875 | 0.024 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 754 | 1064 | 6.15E-45 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 290 | 570 | 2.53E-18 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 727 | 1067 | 6.4E-117 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 289 | 573 | 1.0E-22 | - |
| SMART | SM00320 | WD40_4 | 793 | 832 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 878 | 917 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 743 | 782 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 970 | 1009 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 921 | 959 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1026 | 1065 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 835 | 875 | 1.2E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 928 | 968 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 799 | 841 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 928 | 961 | 9.915599 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 158 | 562 | 9.630214 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 842 | 884 | 11.043142 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 946 | 960 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 819 | 833 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 946 | 960 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 819 | 833 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 862 | 876 | 1.4E-5 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_034894844.1 | protein SPA1-RELATED 2 [Populus alba] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2JGB6 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology