Basic Information
Locus ID:
nbisL1-mrna-6733
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 12096325 | 12100085 | - | nbisL1-mrna-6733 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 56,184.99 Da | 48.84 | 65.13 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18044 | CCCH-type zinc finger | 460 | 479 | 2.3E-8 | IPR041367 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 457 | 480 | 1.57E-7 | IPR036855 |
| SUPERFAMILY | SSF68906 | SAP domain | 73 | 117 | 3.85E-5 | IPR036361 |
| Gene3D | G3DSA:4.10.1000.10 | - | 453 | 485 | 2.8E-7 | - |
| SMART | SM00356 | c3hfinal6 | 456 | 481 | 7.2E-6 | IPR000571 |
| ProSiteProfiles | PS50800 | SAP motif profile. | 83 | 117 | 8.667702 | IPR003034 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 455 | 482 | 16.342293 | IPR000571 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66840.1 | SAP domain-containing protein. | 0 |
| RefSeq | XP_042947108.1 | zinc finger CCCH domain-containing protein 62-like isoform X2 [Carya illinoinensis] | 0 |
| Q338N2 | Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0391300 PE=4 SV=2 | 0 | |
| TrEMBL | A0A8T1RQL6 | Zinc finger CCCH domain-containing protein 62 OS=Carya illinoinensis OX=32201 GN=CIPAW_01G215300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25171, jg40061 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23921, gene_6699 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah027382, Ah028742 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g134430, BVRB_7g169630 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12981, Sbi_jg2007, Sbi_jg34496, Sbi_jg52889 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2760, Seu_jg8974 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00002809, GOSA_00010258, GOSA_00010259 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33977, Sgl39374, Sgl73433, Sgl76958 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001526, gene:ENSEOMG00000003453 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0024790, CQ.Regalona.r1.6BG0026200 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30118780, pistato.v30119480 |
| Apiaceae | Apium graveolens | 2 | Ag4G00214, Ag4G01072 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G007000, COCNU_13G002020 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701803, gene-LOC103714820, gene-LOC120113292 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1911.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G14469, Ftri1G06395 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G66840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004096m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29820.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g014880.2N, BniB03g069890.2N, BniB07g044010.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0785 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0798 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g01680, gene.Cymno09g03870 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g13270, gene.Thate05g25930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10029, nbisL1-mrna-4604 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2177 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023958 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05820, Lb1G05823 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2277, AH03.3719, BH01.2626, BH03.4000, CH01.2793 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2BG0178220, gene-QOZ80_7AG0577500 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0124400.1, HORVU.MOREX.r3.5HG0438120.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_031144, gene-QYE76_039466, gene-QYE76_039711 |
| Poaceae | Oryza coarctata | 2 | Oco13G012880, Oco14G013580 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g42760.1, LOC_Os10g25220.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G237100, gene-BS78_02G352700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205041, Pt_Chr0205044, Pt_Chr0502389 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G014730, Chr19G002110, Chr24G015100, Chr27G015140 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G326600, Tel5E01G139200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG021020, gene_TRIDC2BG024920 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G165900.1, TraesCS2B02G191900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb109490_P003, Zm00001eb266680_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-352 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6870 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.591, evm.TU.LG19.111, evm.TU.LG24.331 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g03590 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1442 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6733 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17115 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11885 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1158 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004241, Maker00008319 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15521, nbisL1-mrna-4106 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3192, nbisL1-mrna-8300 |
| Salicaceae | Populus euphratica | 2 | populus_peu14323, populus_peu33812 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621687, gene-LOC132645278 |
| Solanaceae | Solanum chilense | 2 | SOLCI004246900, SOLCI007273500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009297, gene-LOC107021719 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5420_chr03_-, STRG.8762_chr03_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1697, TC11G0497 |
| Zosteraceae | Zostera marina | 2 | Zosma01g10070.v3.1, Zosma06g04630.v3.1 |