Basic Information
Locus ID:
nbisL1-mrna-6720
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 11980866 | 11981839 | + | nbisL1-mrna-6720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 31,047.80 Da | 63.20 | 72.69 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 99 | 142 | 1.78503E-18 | - |
| Pfam | PF13639 | Ring finger domain | 99 | 142 | 3.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 80 | 154 | 6.52E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 147 | 1.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 100 | 141 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 100 | 142 | 11.854899 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 230 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021609790.1 | RING-H2 finger protein ATL3 [Manihot esculenta] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9W456 | RING-type E3 ubiquitin transferase OS=Manihot esculenta OX=3983 GN=MANES_04G151500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology