Basic Information
Locus ID:
nbisL1-mrna-6717
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 11958580 | 11965886 | + | nbisL1-mrna-6717 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 75,684.65 Da | 42.09 | 85.18 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 397 | 666 | 1.64816E-90 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 71 | 5.8E-9 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 120 | 140 | 1.8 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 393 | 663 | 1.5E-41 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 371 | 663 | 2.89E-71 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 29 | 229 | 7.94E-37 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 470 | 688 | 4.5E-54 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 237 | 2.9E-47 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 357 | 468 | 1.9E-25 | - |
| SMART | SM00369 | LRR_typ_2 | 166 | 189 | 36.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 142 | 165 | 9.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 96 | 120 | 120.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 391 | 666 | 36.385876 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 397 | 420 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 697 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 241 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_043811953.1 | protein STRUBBELIG-RECEPTOR FAMILY 6 [Manihot esculenta] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LNH5 | Leucine-rich repeat receptor-like protein kinase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology