Basic Information
Locus ID:
nbisL1-mrna-6715
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002085F_pilon | 4625471 | 4637236 | - | nbisL1-mrna-6715 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 221,894.52 Da | 42.69 | 86.40 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 562 | 602 | 2.5E-4 | IPR001680 |
| Pfam | PF00759 | Glycosyl hydrolase family 9 | 1553 | 1999 | 1.2E-138 | IPR001701 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 14 | 716 | 4.76E-26 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 17 | 368 | 3.48E-7 | IPR036322 |
| SUPERFAMILY | SSF48371 | ARM repeat | 1028 | 1430 | 5.76E-7 | IPR016024 |
| SUPERFAMILY | SSF48208 | Six-hairpin glycosidases | 1551 | 2007 | 2.13E-151 | IPR008928 |
| Gene3D | G3DSA:2.130.10.10 | - | 470 | 924 | 5.1E-20 | IPR015943 |
| Gene3D | G3DSA:1.50.10.10 | - | 1549 | 2016 | 7.1E-162 | IPR012341 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 211 | 6.8E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 55 | 115 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 554 | 602 | 6.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 5 | 44 | 4.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 653 | 700 | 83.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1415 | 1452 | 90.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 605 | 650 | 280.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 589 | 611 | 10.608706 | IPR001680 |
| ProSitePatterns | PS00698 | Glycosyl hydrolases family 9 (GH9) active site signature 3. | 1977 | 1995 | - | IPR033126 |
| ProSitePatterns | PS00592 | Glycosyl hydrolases family 9 (GH9) active site signature 2. | 1903 | 1929 | - | IPR018221 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 589 | 603 | - | IPR019775 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11270.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021679387.1 | uncharacterized protein LOC110664135 isoform X1 [Hevea brasiliensis] | 0 |
| P22503 | Endoglucanase OS=Phaseolus vulgaris OX=3885 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2LLD6 | Uncharacterized protein LOC105129116 isoform X3 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25525, jg37066 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1792 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004549 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g099790 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23946, Sbi_jg7771 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12252 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001132 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52120, Sgl57389 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006074, gene:ENSEOMG00000023804 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0006700, CQ.Regalona.r1.5BG0006980 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30135350 |
| Apiaceae | Apium graveolens | 1 | Ag6G00710 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G012310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710884 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1424.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G06645 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G11270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028363m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06170.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g050460.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0269 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0318 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02210 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15690 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1461 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005273 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G22007, Lb4G22073 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1744, BH06.1644, CH06.1814 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0530530, gene-QOZ80_6AG0530540 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0710750.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033964 |
| Poaceae | Oryza coarctata | 2 | Oco11G009940, Oco12G009920 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g22550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G142000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400089 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G011460, Chr21G011630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G579800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG047820, gene_TRIDC7BG039610 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G342200.1, TraesCS7B02G240600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb382730_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35436 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32308 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.457, evm.TU.LG17.454 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc09g07880, gene.Posoc09g07900 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.136 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22380 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4410 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20352 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.409 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014268 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3549 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6715 |
| Salicaceae | Populus euphratica | 4 | populus_peu03616, populus_peu03617, populus_peu34459 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634845 |
| Solanaceae | Solanum chilense | 1 | SOLCI005250400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028671 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14759 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3193 |
| Zosteraceae | Zostera marina | 2 | Zosma05g03780.v3.1, Zosma05g13710.v3.1 |