Basic Information
Locus ID:
nbisL1-mrna-6706
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Sister chromatid cohesion protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 11862106 | 11870759 | + | nbisL1-mrna-6706 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 77,820.51 Da | 42.41 | 84.84 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 54 | 266 | 2.3E-8 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 590 | 632 | 4.51E-5 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 583 | 639 | 2.5E-8 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 647 | 703 | - | - |
| Coils | Coil | Coil | 26 | 46 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.5 | - | 0 |
| RefSeq | XP_021661427.1 | uncharacterized protein LOC110650663 isoform X2 [Hevea brasiliensis] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 | |
| TrEMBL | A0A6A6N5M0 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology