halophFGD

Basic Information

Locus ID: nbisL1-mrna-6703

Species & Taxonomic ID: Hibiscus hamabo Siebold & Zucc. & 1841

Genome Assembly:

Description: Receptor-like cytosolic serine threonine-protein kinase RBK1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	15960428	15961946	+	nbisL1-mrna-6703

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.70	25,422.23 Da	35.12	109.31	0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	24	146	7.7E-10	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	20	198	2.45E-26	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	14	149	2.8E-15	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	150	214	2.8E-9	-
SMART	SM00219	tyrkin_6	10	219	5.0E-5	IPR020635
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	231	10.407584	IPR000719

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G65530.1	Protein kinase superfamily protein.
RefSeq	XP_039036459.1	receptor-like cytosolic serine/threonine-protein kinase RBK1 [Hibiscus syriacus]
Swiss-Prot	Q8H1D6	Receptor-like cytosolic serine/threonine-protein kinase RBK1 OS=Arabidopsis thaliana OX=3702 GN=RBK1 PE=1 SV=1
TrEMBL	A0A6A2X810	Receptor-like cytosolic serine/threonine-protein kinase RBK1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111947pilonHSYRG00142 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

No orthogroup found for nbisL1-mrna-6703.