Basic Information
Locus ID:
nbisL1-mrna-67
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001172F_pilon | 366246 | 370324 | - | nbisL1-mrna-67 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 78,050.48 Da | 52.65 | 78.34 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 292 | 503 | 5.71777E-79 | - |
| CDD | cd18794 | SF2_C_RecQ | 504 | 637 | 3.63023E-64 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 353 | 483 | 2.4E-8 | IPR011545 |
| Pfam | PF12023 | Domain of unknown function (DUF3511) | 49 | 81 | 2.1E-13 | IPR021899 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 519 | 627 | 2.5E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 352 | 648 | 4.84E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 504 | 688 | 2.2E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 261 | 503 | 2.6E-64 | IPR027417 |
| SMART | SM00487 | ultradead3 | 294 | 512 | 4.2E-9 | IPR014001 |
| SMART | SM00490 | helicmild6 | 546 | 628 | 1.6E-22 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 293 | 673 | 3.1E-125 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 518 | 668 | 18.585518 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 342 | 496 | 15.966547 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 435 | 444 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 243 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_021645845.1 | ATP-dependent DNA helicase Q-like 1 [Hevea brasiliensis] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A837A6J4 | ATP-dependent DNA helicase OS=Salix suchowensis OX=1278906 GN=IMY05_005G0015300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology