Basic Information
Locus ID:
nbisL1-mrna-67
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 723974 | 727362 | + | nbisL1-mrna-67 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.86 | 26,052.11 Da | 70.40 | 60.82 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 167 | 225 | 1.16901E-5 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 167 | 224 | 9.7E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 226 | 7.46E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 227 | 2.7E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 167 | 224 | 1.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 225 | 10.718918 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039071784.1 | uncharacterized protein LOC120218990 isoform X1 [Hibiscus syriacus] | 0 |
| TrEMBL | A0A6A3BAG5 | Monogalactosyldiacylglycerol synthase 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110202pilonHSYRG00034 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33029 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10595 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014259 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g193160 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg25552 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19234 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011044 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41921, Sgl46719 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010635, gene:ENSEOMG00000033857 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0022720 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30261710, pistato.v30262210 |
| Apiaceae | Apium graveolens | 2 | Ag3G02740, AgUnG01151 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G07759 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1438 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1502 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-67 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001109 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.88, evm.TU.Scaffold_4_RagTag.2269 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12907, nbisL1-mrna-25198 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17320, nbisL1-mrna-6623 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16524, nbisL1-mrna-5010 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1327, evm.TU.utg000033l.59 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000795, Maker00014999 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16716 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14487 |
| Salicaceae | Populus euphratica | 2 | populus_peu05697, populus_peu11080 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603109, gene-LOC132636985 |
| Solanaceae | Solanum chilense | 2 | SOLCI003627100, SOLCI007528800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005668, gene-LOC107024624 |