Basic Information
Locus ID:
nbisL1-mrna-6663
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000063F_pilon | 2902295 | 2903215 | - | nbisL1-mrna-6663 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 18,265.05 Da | 36.71 | 82.73 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 51 | 161 | 2.31E-8 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 38 | 165 | 1.6E-5 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G07410.2 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021689484.1 | U3 small nucleolar RNA-associated protein 4-like [Hevea brasiliensis] | 0 |
| Q8RXU6 | WD repeat-containing protein PCN OS=Arabidopsis thaliana OX=3702 GN=PCN PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LV92 | Transducin-related family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19285 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19243 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6663 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.640 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13124 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10083 |