Basic Information
Locus ID:
nbisL1-mrna-6660
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
RHA3B
Description:
Ring-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002085F_pilon | 4262626 | 4263879 | + | nbisL1-mrna-6660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 21,189.16 Da | 55.45 | 89.26 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 143 | 187 | 2.18967E-15 | - |
| Pfam | PF13639 | Ring finger domain | 143 | 187 | 2.9E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 143 | 189 | 6.63E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 190 | 6.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 144 | 186 | 4.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 144 | 187 | 13.330199 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20823.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010270525.1 | - | 0 |
| Q9LM69 | RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8ARJ4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22426 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3509 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6660 |