Basic Information
Locus ID:
nbisL1-mrna-6651
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002085F_pilon | 4223576 | 4225659 | + | nbisL1-mrna-6651 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 47,066.33 Da | 63.70 | 102.34 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 363 | 407 | 1.05423E-19 | - |
| Pfam | PF13639 | Ring finger domain | 363 | 405 | 8.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 359 | 410 | 4.04E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 357 | 414 | 3.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 364 | 404 | 5.6E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 363 | 405 | 0.0097 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 364 | 405 | 11.987676 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11680.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_012086976.1 | - | 0 |
| Q93Z92 | E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KMB8 | Uncharacterized protein MANES_02G025600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology