Basic Information
Locus ID:
nbisL1-mrna-6633
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Agamous-like MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002085F_pilon | 4089266 | 4095898 | - | nbisL1-mrna-6633 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 21,820.07 Da | 63.15 | 83.16 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 71 | 1.2268E-39 | IPR033896 |
| Pfam | PF01486 | K-box region | 87 | 160 | 1.5E-15 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 58 | 2.0E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 4 | 73 | 3.01E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 96 | 8.9E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 2 | 61 | 2.1E-37 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 2 | 62 | 30.024794 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 89 | 184 | 10.858507 | IPR002487 |
| PRINTS | PR00404 | MADS domain signature | 4 | 24 | 1.2E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 39 | 60 | 1.2E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 24 | 39 | 1.2E-29 | IPR002100 |
| Coils | Coil | Coil | 123 | 146 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.2 | - | 0 |
| RefSeq | XP_048229458.1 | agamous-like MADS-box protein AGL19 [Ricinus communis] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2BW10 | MADS-box protein SOC1-like OS=Populus trichocarpa OX=3694 GN=POPTR_001G112400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology