Basic Information
Locus ID:
nbisL1-mrna-6603
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 14818784 | 14823392 | - | nbisL1-mrna-6603 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 64,825.15 Da | 55.61 | 70.59 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 209 | 261 | 3.98642E-24 | - |
| Pfam | PF12315 | Protein DA1 | 358 | 566 | 6.5E-98 | IPR022087 |
| Pfam | PF00412 | LIM domain | 209 | 263 | 2.6E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 235 | 291 | 4.12E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 202 | 234 | 2.0E-6 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 203 | 268 | 1.2E-13 | - |
| SMART | SM00726 | uim | 80 | 99 | 100.0 | IPR003903 |
| SMART | SM00726 | uim | 169 | 188 | 0.059 | IPR003903 |
| SMART | SM00132 | lim_4 | 208 | 260 | 1.3E-11 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 207 | 267 | 11.4346 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 169 | 188 | 10.010044 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 209 | 243 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 139 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_039021056.1 | protein DA1-related 1-like isoform X1 [Hibiscus syriacus] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6A2Z128 | Protein DA1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111098pilonHSYRG00005 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology