Basic Information
Locus ID:
nbisL1-mrna-6597
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 10895703 | 10897922 | - | nbisL1-mrna-6597 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 41,545.29 Da | 69.41 | 75.27 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 147 | 190 | 1.18856E-18 | - |
| Pfam | PF13639 | Ring finger domain | 147 | 190 | 5.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 142 | 196 | 3.53E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 199 | 5.4E-22 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 144 | 197 | 0.0055 | - |
| SMART | SM00184 | ring_2 | 148 | 189 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 190 | 12.902362 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 325 | - | - |
| Coils | Coil | Coil | 243 | 263 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002522602.2 | RING-H2 finger protein ATL54 [Ricinus communis] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2MLC4 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology