Basic Information
Locus ID:
nbisL1-mrna-6571
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Serine/Threonine protein kinases, catalytic domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 10733429 | 10737373 | + | nbisL1-mrna-6571 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 51,611.35 Da | 44.86 | 81.68 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05574 | STKc_phototropin_like | 104 | 449 | 1.36475E-162 | - |
| Pfam | PF00069 | Protein kinase domain | 327 | 430 | 1.1E-20 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 101 | 264 | 2.0E-32 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 87 | 453 | 2.86E-71 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 178 | 255 | 2.6E-44 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 324 | 448 | 7.5E-38 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 99 | 177 | 2.6E-44 | - |
| SMART | SM00220 | serkin_6 | 97 | 430 | 2.7E-71 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 97 | 430 | 41.926403 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 219 | 231 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44610.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_002311957.2 | serine/threonine-protein kinase D6PKL1 [Populus trichocarpa] | 0 |
| Q9FG74 | Serine/threonine-protein kinase D6PK OS=Arabidopsis thaliana OX=3702 GN=D6PK PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7Z6F5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg14488, jg16459, jg35983, jg8164 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6785 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g176500 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26990, Sbi_jg33563 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8268 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73275, Sgl76796 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000035884, gene:ENSEOMG00000037471 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0000570, CQ.Regalona.r1.9BG0005230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30169800 |
| Apiaceae | Apium graveolens | 2 | Ag11G04361, Ag11G04531 |
| Arecaceae | Cocos nucifera | 1 | scaffold028293G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706093 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.8.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G30657, Ftri2G30797, Ftri6G28322 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G44610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002527m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g16590.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g057660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1202 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1213 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g08750 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g16160 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1265, evm.TU.LG09.720 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015839, Pov_00019409 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19630 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.198, BH05.228, CH05.281 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0381550, gene-QOZ80_5BG0428570 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0459810.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003003, gene-QYE76_003104 |
| Poaceae | Oryza coarctata | 4 | Oco21G001170, Oco22G002030, Oco23G001800, Oco24G001330 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g05320.1, LOC_Os12g05394.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G024100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703188, Pt_Chr0703231 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G022170, Chr06G023890, Chr07G021330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G234900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG022020, gene_TRIDC5BG022510 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G129700.1, TraesCS5B02G128400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb262760_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25650 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18414, Zma_g24734, Zma_g30363 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.354, evm.TU.LG24.188 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g22670 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.60361.17, evm.TU.60362.16 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30638, nbisL1-mrna-6571 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13426, nbisL1-mrna-572 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-21029, nbisL1-mrna-21171 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.237, evm.TU.utg000016l.899 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015670 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11081, nbisL1-mrna-4166 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21767, nbisL1-mrna-22149 |
| Salicaceae | Populus euphratica | 4 | populus_peu06121, populus_peu08585, populus_peu19983 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600553, gene-LOC132614031 |
| Solanaceae | Solanum chilense | 2 | SOLCI003372600, SOLCI006099300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003029, gene-LOC107003284 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14710 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3576 |
| Zosteraceae | Zostera marina | 1 | Zosma04g24400.v3.1 |