Basic Information
Locus ID:
nbisL1-mrna-6567
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 9699001 | 9707259 | - | nbisL1-mrna-6567 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 113,388.59 Da | 28.79 | 81.32 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 41 | 317 | 1.91793E-180 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 359 | 450 | 1.0E-18 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 901 | 1006 | 1.4E-11 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 42 | 353 | 1.5E-91 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 607 | 819 | 1.9E-53 | IPR011682 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 30 | 354 | 4.45E-110 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 357 | 451 | 3.6E-25 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 462 | 1009 | 1.54E-146 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1360 | - | 890 | 1009 | 2.1E-35 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 41 | 321 | 3.3E-120 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 401 | 1.0E-29 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 402 | 455 | 1.6E-19 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 604 | 867 | 2.1E-100 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 474 | 597 | 1.6E-24 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 2.6E-17 | IPR015341 |
| Coils | Coil | Coil | 948 | 968 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_012065851.1 | alpha-mannosidase [Jatropha curcas] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067LFA1 | Alpha-mannosidase OS=Jatropha curcas OX=180498 GN=JCGZ_22737 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology