Basic Information
Locus ID:
nbisL1-mrna-6564
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 10680881 | 10685967 | + | nbisL1-mrna-6564 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 110,989.91 Da | 34.17 | 102.34 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 491 | 550 | 5.4E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 250 | 272 | 0.68 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 708 | 987 | 1.9E-45 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 77 | 1.7E-5 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 63 | 383 | 1.22E-63 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 700 | 989 | 4.45E-72 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 368 | 627 | 2.38E-54 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 197 | 1.9E-42 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 784 | 998 | 1.0E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 354 | 634 | 2.3E-83 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 198 | 274 | 3.7E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 275 | 345 | 4.6E-16 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 671 | 783 | 2.1E-20 | - |
| SMART | SM00369 | LRR_typ_2 | 152 | 176 | 410.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 344 | 368 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 248 | 272 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 128 | 151 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 440 | 464 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 561 | 585 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 296 | 319 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 224 | 247 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 513 | 537 | 19.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 706 | 966 | 3.1E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 706 | 997 | 36.442413 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 828 | 840 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_034921811.1 | - | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A836XTM8 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology