halophFGD

Basic Information

Locus ID: nbisL1-mrna-6559

Species & Taxonomic ID: Ceriops zippeliana & 413951

Genome Assembly: GCA_037897445.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
000065F_pilon	5453419	5461026	+	nbisL1-mrna-6559

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.59	44,610.60 Da	41.63	74.72	-0.39

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01459	vWA_copine_like	50	299	3.65244E-115	IPR010734
Pfam	PF07002	Copine	96	309	5.1E-74	IPR010734
Pfam	PF13920	Zinc finger, C3HC4 type (RING finger)	351	392	1.3E-8	-
SUPERFAMILY	SSF57850	RING/U-box	345	392	7.39E-6	-
SUPERFAMILY	SSF53300	vWA-like	72	253	2.74E-10	IPR036465
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	341	398	1.1E-12	IPR013083
SMART	SM00184	ring_2	354	386	0.0053	IPR001841
SMART	SM00327	VWA_4	71	270	3.4E-6	IPR002035
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	354	387	10.822189	IPR001841

KEGG Pathway

KO Term:

K16280 (E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G63970.1	Copine (Calcium-dependent phospholipid-binding protein) family.
RefSeq	XP_015572999.1	E3 ubiquitin-protein ligase RGLG3 [Ricinus communis]
Swiss-Prot	Q8RX26	E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 SV=1
TrEMBL	A0A2P2KRN2	RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg18806, jg19870, jg20521, jg20545, jg21730, jg25951, jg5533 ... jg39682, jg40407, jg7000
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11861, gene_17478
Amaranthaceae	Atriplex hortensis	3	Ah005418, Ah012182, Ah013763
Amaranthaceae	Beta vulgaris	3	BVRB_4g079000, BVRB_6g145130, BVRB_6g147210
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg17649, Sbi_jg17650, Sbi_jg42024, Sbi_jg42800 ... Sbi_jg45424, Sbi_jg48084, Sbi_jg62330
Amaranthaceae	Salicornia europaea	3	Seu_jg11282, Seu_jg27443, Seu_jg900
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002518, GOSA_00007328, GOSA_00019428
Amaranthaceae	Suaeda glauca	7	Sgl24032, Sgl29214, Sgl31681, Sgl35178, Sgl36987, Sgl37280 ... Sgl40557
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000001716, gene:ENSEOMG00000003568 ... gene:ENSEOMG00000011302, gene:ENSEOMG00000012327, gene:ENSEOMG00000024942, gene:ENSEOMG00000026436, gene:ENSEOMG00000027130, gene:ENSEOMG00000044319
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0005390, CQ.Regalona.r1.4BG0005370 ... CQ.Regalona.r1.6AG0004130, CQ.Regalona.r1.6AG0011130, CQ.Regalona.r1.6BG0004220, CQ.Regalona.r1.6BG0011780
Anacardiaceae	Pistacia vera	3	pistato.v30140260, pistato.v30180260, pistato.v30201500
Apiaceae	Apium graveolens	4	Ag1G01261, Ag3G02069, Ag5G00721, AgUnG00448
Arecaceae	Cocos nucifera	6	COCNU_02G013530, COCNU_08G003720, COCNU_11G001810 ... scaffold001223G000060, scaffold001325G000020, scaffold016239G000050
Arecaceae	Phoenix dactylifera	12	gene-LOC103697793, gene-LOC103698408, gene-LOC103701349 ... gene-LOC103704949, gene-LOC103710674, gene-LOC103712299, gene-LOC103712316, gene-LOC103718705, gene-LOC103719831, gene-LOC120103649, gene-LOC120107860, gene-LOC120111355
Asparagaceae	Asparagus officinalis	5	AsparagusV1_02.887.V1.1, AsparagusV1_05.1090.V1.1 ... AsparagusV1_08.2475.V1.1, AsparagusV1_09.644.V1.1, AsparagusV1_09.988.V1.1
Asteraceae	Flaveria trinervia	7	Ftri10G15752, Ftri11G24714, Ftri13G17878, Ftri17G12010 ... Ftri18G09509, Ftri1G28742, Ftri5G02107
Brassicaceae	Arabidopsis thaliana	5	AT1G67800.2, AT1G79380.1, AT3G01650.1, AT5G14420.1 ... AT5G63970.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10004448m.g.v1.0, Thhalv10007950m.g.v1.0 ... Thhalv10013466m.g.v1.0, Thhalv10018670m.g.v1.0, Thhalv10019546m.g.v1.0, Thhalv10020651m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g23240.v2.2, Sp2g27040.v2.2, Sp3g00400.v2.2 ... Sp5g22810.v2.2, Sp5g34430.v2.2, Sp6g29600.v2.2
Brassicaceae	Brassica nigra	11	BniB01g060360.2N, BniB02g048250.2N, BniB03g045190.2N ... BniB04g001640.2N, BniB04g041370.2N, BniB05g024100.2N, BniB06g012210.2N, BniB06g050810.2N, BniB06g067740.2N, BniB07g035210.2N, BniB08g006940.2N
Casuarinaceae	Casuarina equisetifolia	8	Ceq01G1867, Ceq02G1427, Ceq02G1909, Ceq03G1688, Ceq03G1696 ... Ceq06G1698, Ceq07G1336, CeqSG0286
Casuarinaceae	Casuarina glauca	6	Cgl01G2034, Cgl02G1472, Cgl02G1986, Cgl03G1814, Cgl06G1760 ... Cgl07G1408
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g05930, gene.Cymno07g10390, gene.Cymno07g12730 ... gene.Cymno08g07180
Dunaliellaceae	Dunaliella salina	3	Dusal.0176s00017.v1.0, Dusal.0176s00019.v1.0 ... Dusal.0176s00020.v1.0
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate04g23040, gene.Thate04g23070, gene.Thate05g15550 ... gene.Thate07g18210, gene.Thate09g12580, gene.Thate09g19360
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10209, nbisL1-mrna-11515, nbisL1-mrna-2016 ... nbisL1-mrna-2273
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.2980, evm.TU.LG03.650, evm.TU.LG05.252 ... evm.TU.LG10.983, evm.TU.LG11.78
Plantaginaceae	Plantago ovata	6	Pov_00014184, Pov_00022280, Pov_00024198, Pov_00027824 ... Pov_00033830, Pov_00041507
Plumbaginaceae	Limonium bicolor	4	Lb1G00933, Lb1G07235, Lb3G20769, Lb6G31023
Poaceae	Echinochloa crus-galli	20	AH01.5296, AH02.4247, AH02.4592, AH03.1077, AH06.2261 ... AH08.1922, AH08.253, BH02.4274, BH02.4650, BH03.1242, BH05.3292, BH06.2001, BH08.2013, BH08.238, CH02.4694, CH03.1377, CH05.3398, CH06.2281, CH08.2198, CH08.290
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_1AG0043760, gene-QOZ80_1AG0047380 ... gene-QOZ80_1BG0093790, gene-QOZ80_5AG0388180, gene-QOZ80_5BG0436580, gene-QOZ80_6AG0525640, gene-QOZ80_6AG0544700, gene-QOZ80_6BG0479320, gene-QOZ80_6BG0498200, gene-QOZ80_8AG0616480, gene-QOZ80_8AG0635600, gene-QOZ80_8BG0644030, gene-QOZ80_8BG0664410
Poaceae	Hordeum vulgare	9	HORVU.MOREX.r3.3HG0308290.1, HORVU.MOREX.r3.3HG0323770.1 ... HORVU.MOREX.r3.3HG0323800.1, HORVU.MOREX.r3.5HG0457210.1, HORVU.MOREX.r3.5HG0507280.1, HORVU.MOREX.r3.7HG0677600.1, HORVU.MOREX.r3.7HG0702360.2, HORVU.MOREX.r3.7HG0720740.1, HORVU.MOREX.r3.7HG0720750.1
Poaceae	Lolium multiflorum	9	gene-QYE76_002729, gene-QYE76_006882, gene-QYE76_008368 ... gene-QYE76_018103, gene-QYE76_029803, gene-QYE76_034997, gene-QYE76_035042, gene-QYE76_057242, gene-QYE76_057256
Poaceae	Oryza coarctata	12	Oco01G027840, Oco02G028940, Oco02G031630, Oco11G012470 ... Oco12G012790, Oco15G001510, Oco16G001620, Oco16G010680, Oco17G012000, Oco18G011960, Oco23G005060, Oco24G004610
Poaceae	Oryza sativa	6	LOC_Os01g68060.1, LOC_Os01g73000.1, LOC_Os06g40650.1 ... LOC_Os08g04130.1, LOC_Os08g38600.1, LOC_Os12g19030.1
Poaceae	Paspalum vaginatum	6	gene-BS78_02G129500, gene-BS78_03G374000 ... gene-BS78_03G409500, gene-BS78_07G034200, gene-BS78_07G175900, gene-BS78_10G188100
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0302964, Pt_Chr0400713, Pt_Chr0400722, Pt_Chr0400751 ... Pt_Chr0402524, Pt_Chr0404006, Pt_Chr0600356, Pt_Chr0600401, Pt_Chr0700536, Pt_Chr0700591, Pt_Chr0703444
Poaceae	Sporobolus alterniflorus	19	Chr02G030000, Chr03G022320, Chr03G023760, Chr04G014460 ... Chr05G007730, Chr05G031350, Chr06G022130, Chr08G018010, Chr08G019640, Chr0G005730, Chr0G024530, Chr0G031250, Chr10G005840, Chr10G017840, Chr11G004760, Chr11G013450, Chr20G000340, Chr20G013290, Chr29G003080
Poaceae	Thinopyrum elongatum	7	Tel3E01G658600, Tel3E01G827900, Tel5E01G202200 ... Tel5E01G588400, Tel7E01G423800, Tel7E01G517800, Tel7E01G646000
Poaceae	Triticum dicoccoides	11	gene_TRIDC3AG058880, gene_TRIDC3AG071480 ... gene_TRIDC3BG065980, gene_TRIDC5AG016350, gene_TRIDC5AG053990, gene_TRIDC7AG030450, gene_TRIDC7AG043040, gene_TRIDC7AG053140, gene_TRIDC7BG021300, gene_TRIDC7BG034360, gene_TRIDC7BG045770
Poaceae	Triticum aestivum	22	TraesCS3A02G414400.2, TraesCS3A02G503300.1 ... TraesCS3A02G503400.1, TraesCS3B02G449200.1, TraesCS3B02G566800.1, TraesCS3D02G408900.1, TraesCS3D02G510000.1, TraesCS5A02G103800.2, TraesCS5A02G368900.1, TraesCS5B02G371300.1, TraesCS5D02G122000.1, TraesCS5D02G378400.2, TraesCS7A02G308900.1, TraesCS7A02G381200.1, TraesCS7A02G381300.1, TraesCS7B02G134400.1, TraesCS7B02G208900.1, TraesCS7B02G283100.1, TraesCS7B02G283200.1, TraesCS7D02G305600.1, TraesCS7D02G377500.1, TraesCS7D02G377600.1
Poaceae	Zea mays	7	Zm00001eb133150_P001, Zm00001eb144000_P002 ... Zm00001eb261900_P001, Zm00001eb276190_P001, Zm00001eb362520_P003, Zm00001eb365180_P001, Zm00001eb386670_P001
Poaceae	Zoysia japonica	6	nbis-gene-11061, nbis-gene-12443, nbis-gene-28416 ... nbis-gene-28417, nbis-gene-31869, nbis-gene-41507
Poaceae	Zoysia macrostachya	8	Zma_g11765, Zma_g23573, Zma_g24299, Zma_g25724, Zma_g29867 ... Zma_g32058, Zma_g33055, Zma_g9224
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.1247, evm.TU.LG01.180, evm.TU.LG04.572 ... evm.TU.LG08.1226, evm.TU.LG14.563, evm.TU.LG18.1489, evm.TU.LG20.391, evm.TU.LG22.135
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g07070, gene.Posoc05g01900, gene.Posoc05g01920 ... gene.Posoc05g07920, gene.Posoc05g18850
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_15_RagTag.802, evm.TU.Scaffold_15_RagTag.803 ... evm.TU.Scaffold_17_RagTag.169, evm.TU.Scaffold_3_RagTag.885, evm.TU.Scaffold_5_RagTag.23, evm.TU.Scaffold_6_RagTag.104
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-10381, nbisL1-mrna-1116, nbisL1-mrna-14925 ... nbisL1-mrna-23164, nbisL1-mrna-26989, nbisL1-mrna-27178, nbisL1-mrna-28960, nbisL1-mrna-9282
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-10652, nbisL1-mrna-13703, nbisL1-mrna-14590 ... nbisL1-mrna-5768, nbisL1-mrna-612, nbisL1-mrna-6716
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-10733, nbisL1-mrna-14705, nbisL1-mrna-15597 ... nbisL1-mrna-1909, nbisL1-mrna-6559, nbisL1-mrna-94
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000001l.438, evm.TU.utg000006l.15 ... evm.TU.utg000008l.270, evm.TU.utg000011l.74, evm.TU.utg000013l.121, evm.TU.utg000019l.660
Rhizophoraceae	Kandelia obovata	6	Maker00000989, Maker00002493, Maker00006602, Maker00007858 ... Maker00012763, Maker00013265
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-11222, nbisL1-mrna-11901, nbisL1-mrna-14638 ... nbisL1-mrna-5127, nbisL1-mrna-7030, nbisL1-mrna-9330
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-1407, nbisL1-mrna-15923, nbisL1-mrna-17487 ... nbisL1-mrna-17718, nbisL1-mrna-19715, nbisL1-mrna-6852
Salicaceae	Populus euphratica	12	populus_peu01126, populus_peu06673, populus_peu07689 ... populus_peu10484, populus_peu13677, populus_peu20561, populus_peu21742, populus_peu22837, populus_peu26555, populus_peu28740, populus_peu28755, populus_peu30178
Solanaceae	Lycium barbarum	4	gene-LOC132610700, gene-LOC132621135, gene-LOC132632564 ... gene-LOC132640756
Solanaceae	Solanum chilense	4	SOLCI003283800, SOLCI004182100, SOLCI004278600 ... SOLCI004736500
Solanaceae	Solanum pennellii	4	gene-LOC107011625, gene-LOC107015330, gene-LOC107018467 ... gene-LOC107029366
Tamaricaceae	Reaumuria soongarica	4	STRG.22587_chr10_+, STRG.23286_chr05_+, gene_1611 ... gene_18012
Tamaricaceae	Tamarix chinensis	4	TC01G3548, TC02G1385, TC03G1307, TC04G1093
Zosteraceae	Zostera marina	5	Zosma01g34440.v3.1, Zosma04g01220.v3.1, Zosma05g08290.v3.1 ... Zosma05g11130.v3.1, Zosma06g16400.v3.1