Basic Information
Locus ID:
nbisL1-mrna-6556
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the ATG8 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002085F_pilon | 3546981 | 3553646 | + | nbisL1-mrna-6556 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 14,126.11 Da | 33.34 | 87.13 | -0.42 |
Protein Domain:
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04212 (Longevity regulating pathway - worm)
map04212 (Longevity regulating pathway - worm)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
map04621 (NOD-like receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16520.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_043698506.1 | autophagy-related protein 8f-like [Telopea speciosissima] | 0 |
| Q8VYK7 | Autophagy-related protein 8f OS=Arabidopsis thaliana OX=3702 GN=ATG8F PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KBJ0 | Autophagy-related protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology