HalophFGD

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Basic Information
Locus ID: nbisL1-mrna-649
Species & Taxonomic ID: Ceriops zippeliana & 413951
Genome Assembly: GCA_037897445.1
Description: Pentatricopeptide repeat-containing protein At3g22670
Maps and Mapping Data
Chromosome Start End Strand ID
000003F_pilon 3810458 3812113 - nbisL1-mrna-649
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.69 61,964.81 Da 44.01 80.71 -0.33
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF01535 PPR repeat 207 237 0.001 IPR002885
Pfam PF17177 Pentacotripeptide-repeat region of PRORP 395 526 3.1E-10 IPR033443
Pfam PF12854 PPR repeat 271 302 1.9E-7 IPR002885
Pfam PF01535 PPR repeat 244 269 0.024 IPR002885
Pfam PF01535 PPR repeat 174 199 0.003 IPR002885
Pfam PF13041 PPR repeat family 308 356 3.4E-14 IPR002885
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 336 430 5.2E-28 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 431 551 1.2E-23 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 270 335 2.7E-16 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 100 269 1.6E-21 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 311 345 1.7E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 277 310 3.0E-10 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 173 199 2.9E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 208 240 1.7E-4 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 383 411 1.1E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 346 380 8.0E-12 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 487 518 4.4E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 417 450 1.7E-5 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 309 343 12.090371 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 379 413 11.114816 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 344 378 13.219385 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 414 448 9.45966 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 205 239 10.062531 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 274 308 12.912469 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 484 518 12.375365 IPR002885
Coils Coil Coil 528 551 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G22670.1 Pentatricopeptide repeat (PPR) superfamily protein. 0
RefSeq XP_021670213.1 pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Hevea brasiliensis] 0
Swiss-Prot Q9LUJ4 Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22670 PE=2 SV=1 0
TrEMBL A0A2C9W8B4 Pentatricopeptide repeat-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G175400 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg5752, jg9557
Aizoaceae Mesembryanthemum crystallinum 2 gene_3540, gene_5373
Amaranthaceae Beta vulgaris 1 BVRB_6g151540
Amaranthaceae Salicornia bigelovii 4 Sbi_jg26547, Sbi_jg34020, Sbi_jg42730, Sbi_jg45355
Amaranthaceae Salicornia europaea 2 Seu_jg11218, Seu_jg15074
Amaranthaceae Suaeda aralocaspica 1 GOSA_00002583
Amaranthaceae Suaeda glauca 4 Sgl35089, Sgl40474, Sgl73833, Sgl77335
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000002884, gene:ENSEOMG00000006357 ...
gene:ENSEOMG00000015373, gene:ENSEOMG00000037249
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.6AG0003540, CQ.Regalona.r1.6BG0003500 ...
CQ.Regalona.r1.7AG0010320
Anacardiaceae Pistacia vera 2 pistato.v30228080, pistato.v30236350
Apiaceae Apium graveolens 2 Ag1G01844, Ag5G02278
Arecaceae Cocos nucifera 3 COCNU_03G001310, COCNU_03G001330, COCNU_04G007320
Arecaceae Phoenix dactylifera 2 gene-LOC103718091, gene-LOC103718684
Asparagaceae Asparagus officinalis 2 AsparagusV1_03.2689.V1.1, AsparagusV1_08.1881.V1.1
Asteraceae Flaveria trinervia 2 Ftri15G22017, Ftri9G15803
Brassicaceae Arabidopsis thaliana 2 AT3G04130.1, AT3G22670.1
Brassicaceae Eutrema salsugineum 2 Thhalv10020419m.g.v1.0, Thhalv10020548m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp3g03100.v2.2, Sp3g20430.v2.2
Brassicaceae Brassica nigra 4 BniB01g059340.2N, BniB03g024780.2N, BniB07g032460.2N ...
BniB07g032470.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq07G1278
Casuarinaceae Casuarina glauca 1 Cgl07G1351
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g03570, gene.Cymno09g09580
Hydrocharitaceae Thalassia testudinum 1 gene.Thate03g04160
Nitrariaceae Nitraria sibirica 2 evm.TU.LG03.712, evm.TU.LG11.999
Plantaginaceae Plantago ovata 2 Pov_00021764, Pov_00022238
Plumbaginaceae Limonium bicolor 2 Lb1G00954, Lb1G08048
Poaceae Echinochloa crus-galli 4 BH01.2664, BH01.761, CH01.757, Contig309.108
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_2AG0136490, gene-QOZ80_2BG0192130 ...
gene-QOZ80_3AG0216460, gene-QOZ80_3BG0261780
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.5HG0510080.1.CDS1 ...
HORVU.MOREX.r3.6HG0592070.1.CDS1
Poaceae Lolium multiflorum 2 gene-QYE76_023481, gene-QYE76_061911
Poaceae Oryza coarctata 3 Oco03G014520, Oco04G014970, Oco06G024280
Poaceae Oryza sativa 1 LOC_Os02g38950.1
Poaceae Paspalum vaginatum 2 gene-BS78_01G083600, gene-BS78_04G186700
Poaceae Sporobolus alterniflorus 4 Chr01G005430, Chr09G012410, Chr12G037810, Chr13G008330
Poaceae Thinopyrum elongatum 1 Tel6E01G415700
Poaceae Triticum dicoccoides 4 gene_TRIDC5AG056230, gene_TRIDC5BG060280 ...
gene_TRIDC6AG033070, gene_TRIDC6BG039410
Poaceae Triticum aestivum 6 TraesCS5A02G384400.1.cds1, TraesCS5B02G389200.1.cds1 ...
TraesCS5D02G394000.1.cds1, TraesCS6A02G213800.1.cds1, TraesCS6B02G243800.1.cds1, TraesCS6D02G196400.1.cds1
Poaceae Zea mays 2 Zm00001eb057030_P001, Zm00001eb246390_P001
Poaceae Zoysia japonica 1 nbis-gene-23463
Poaceae Zoysia macrostachya 2 Zma_g13832, Zma_g494
Portulacaceae Portulaca oleracea 2 evm.TU.LG02.2560, evm.TU.LG13.94
Posidoniaceae Posidonia oceanica 3 gene.Posoc01g07610, gene.Posoc04g01610, gene.Posoc05g00670
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_17_RagTag.159, evm.TU.Scaffold_6_RagTag.775
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-15921, nbisL1-mrna-23199
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-16773, nbisL1-mrna-9301
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14672, nbisL1-mrna-649
Rhizophoraceae Kandelia candel 2 add.evm.TU.utg000011l.190, add.evm.TU.utg000013l.29
Rhizophoraceae Kandelia obovata 1 Maker00006512
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-19530, nbisL1-mrna-22921
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-15954, nbisL1-mrna-3499
Salicaceae Populus euphratica 5 populus_peu07647, populus_peu21418, populus_peu21419 ...
populus_peu21420, populus_peu21689
Solanaceae Lycium barbarum 2 gene-LOC132609668, gene-LOC132641233
Solanaceae Solanum chilense 2 SOLCI004820900, SOLCI007024500
Solanaceae Solanum pennellii 2 gene-LOC107020744, gene-LOC107031368
Tamaricaceae Reaumuria soongarica 2 STRG.19726_chr07_+, gene_15533
Tamaricaceae Tamarix chinensis 2 TC04G0518, TC09G0412
Zosteraceae Zostera marina 3 Zosma01g34550.v3.1, Zosma01g40775.v3.1, Zosma04g00720.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.