Basic Information
Locus ID:
nbisL1-mrna-6473
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 13715503 | 13719095 | + | nbisL1-mrna-6473 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 21,678.27 Da | 58.48 | 55.00 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 3 | 105 | 1.6E-18 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 110 | 158 | 1.8E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 100 | 160 | 2.21E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 172 | 8.0E-20 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 102 | 7.6E-25 | IPR043151 |
| SMART | SM00249 | PHD_3 | 110 | 157 | 2.0E-8 | IPR001965 |
| SMART | SM00439 | BAH_4 | 1 | 106 | 1.7E-30 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 1 | 106 | 21.003111 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 108 | 159 | 9.0806 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 111 | 156 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_017969599.1 | PREDICTED: chromatin remodeling protein EBS [Theobroma cacao] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A061DMJ9 | PHD finger family protein / bromo-adjacent (BAH) domain-containing protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_002152 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology