Basic Information
Locus ID:
nbisL1-mrna-6472
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002085F_pilon | 2914900 | 2951464 | + | nbisL1-mrna-6472 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 489,373.75 Da | 42.78 | 90.70 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2891 | 2976 | 1.7E-6 | IPR010482 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 529 | 750 | 3.4E-33 | IPR031642 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 109 | 3.0E-31 | IPR026854 |
| Pfam | PF00169 | PH domain | 772 | 880 | 3.4E-7 | IPR001849 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2226 | 2373 | 2.1E-12 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 340 | 6.6E-51 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1992 | 2155 | 1.8E-11 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3340 | 3505 | 4.9E-10 | IPR009543 |
| SUPERFAMILY | SSF50729 | PH domain-like | 768 | 883 | 2.5E-7 | - |
| SMART | SM00233 | PH_update | 770 | 883 | 6.1E-4 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 769 | 881 | 7.2406 | IPR001849 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_021649529.1 | uncharacterized protein LOC110641940 isoform X1 [Hevea brasiliensis] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MGV9 | PH domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology